HeatmapGenerator is a graphical user interface software program written in C++, R, and OpenGL to create customized gene expression heatmaps from RNA-seq and microarray data in medical research. HeatmapGenerator can also be used to make heatmaps in a variety of other non-medical fields.
HeatmapGenerator is peer-reviewed published software (http://www.scfbm.org/content/9/1/30). When using this software, please cite: [Khomtchouk et al.: “HeatmapGenerator: High performance RNAseq and microarray visualization software suite to examine differential gene expression levels using an R and C++ hybrid computational pipeline.” Source Code for Biology and Medicine, 2014 9:30]
For direct download of HeatmapGenerator binary executable files, please visit: http://sourceforge.net/projects/heatmapgenerator. For interested software developers and project contributors, please fork HeatmapGenerator source code at the following Github repository: https://github.com/Bohdan-Khomtchouk/HeatmapGenerator
Bohdan Khomtchouk wishes to acknowledge the support of the Department of Defense (DoD) through the National Defense Science & Engineering Graduate Fellowship (NDSEG) Program.This research was conducted with Government support under and awarded by DoD, Army Research Office (ARO), National Defense Science and Engineering Graduate (NDSEG) Fellowship, 32 CFR 168a.
HeatmapGenerator is released under the GNU General Public License.
HeatmapGenerator can handle an unlimited number of heatmaps in its storage system. Software logo, licensure, copyright information, and user instructions are provided.